Austria’s leading company - CBmed is a center for biomarker research in medicine with headquarter in Graz. It links excellent research infrastructure, scientific expertise, medical knowledge, national and international industry partners for systematic medical biomarker research.
To strengthen our team in Graz, we are seeking to recruit an ambitious, committed
Bioinformatician/Data Engineer (f/m/d)
Your tasks and responsibilities:
Develop, standardize and execute data processing pipelines (ETL) for biomedical data
Taking on the role of a data steward, ensuring that all data activities are documented and follow the highest quality and cyber security standards
Work together with IT team to automate ETL processes
Work with existing relational databases and object stores (on-prem and cloud)
Improve existing in-house web applications for data access and visualization for both in-house as well as scientific and industry partners
Contribute to in-house python-based feature extraction pipelines for raw laboratory output (e.g. microscope images) together with data scientists
Work together with laboratory scientists
Expected skills and abilities:
You have/are completing an MSc in bioinformatics, computer science, or related fields
You are experienced with python and R for ETL and data analysis
You have experience with the Linux command line
You have hands-on experience with relational databases, in particular MySQL
Optional plus: First hands-on experience with Docker
Optional plus: Experience with python for data visualization and web development
Expected soft-skills:
Precise and reliable working: you have strong focus on delivering precise results according to specifications, including documentation of your work and delivering on time
Independent and pro-active working style
Good listening, communication, and personal skills to cooperate with lab colleagues
Very good command of English, written and spoken
Optional and beneficial skills include experience with:
Collaborative working tools (git, ticketing systems)
Experience with biomedical data (e.g., pathology images, flow cytometry, NGS, metabolomics, microbiome, …)
Experience with image analysis and computer vision (including machine learning and conventional methods)
Working in an ISO certified environment
Very good command of English and German, written and spoken
What we offer:
Flexible workhours with possibility of home office
Family-friendly environment
Jobticket
You will have the opportunity to work in an internationally connected company, within a
Motivated and dedicated team
Your work on improving and maintaining our data pipelines will directly impact patient well
being, both in the short-term through drug screening approaches and in the long-term
through state-of-the-art biomarker research
Opportunity to learn new tools and shape your own work experience by using the technology
and tools of your choice
Details about this job
Full Time (Permanent employment)
- Monday to Friday
- 40 hours
Part Time (Permanent employment)
Place of work
- Graz
Must-have skills
- python
- R
- Linux command line
- MySQL
- ticketing systems
Nice-to-have skills
- Docker
- git
- biomedical data
Required languages
- English B2
Nice-to-have languages
- German B2
Must-have education
- You have/are completing an MSc in bioinformatics, computer science, or related fields
Details about this job
Full Time (Permanent employment)
- Monday to Friday
- 40 hours
Part Time (Permanent employment)
Place of work
- Graz
Must-have skills
- python
- R
- Linux command line
- MySQL
- ticketing systems
Nice-to-have skills
- Docker
- git
- biomedical data
Required languages
- English B2
Nice-to-have languages
- German B2
Must-have education
- You have/are completing an MSc in bioinformatics, computer science, or related fields
Salary
We offer an unlimited contract with a minimum annual salary from € 58 000 gross based on 40 hours/week (with at least 3 years of experience). Overpayment is possible, depending on qualifications and work experience. The position is filled on a full-time or part-time basis.
Benefits
-
Flexible working hours
-
Home office
-
Transportation allowance
-
Flexible working hours
-
Home office
-
Transportation allowance
Contact person
Stefanie Michaela Jandrisits, M.A.
+43 316 385 28808
CBmed lives an inclusion and supportive work culture. We encourage diversity across all levels. Our common goal is enabling precision medicine.
Diversity enriches our work. We welcome applications from people from all walks of life and with a variety of experiences.
